- Predicted Gene MLOC_18047
MLOC_18047 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 7.56858 | 6.80875 | 4.88643 | 6.3574 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 1.85833 | 0.753274 | 0.939369 | 1.04709 |
INF1 | Young developing inflorescences (5mm) | 24.627 | 28.8997 | 25.2316 | 20.777 |
INF2 | Developing inflorescences (1-1.5 cm) | 26.0547 | 28.5378 | 25.7967 | 27.7691 |
ROO | Roots from the seedlings (10 cm shoot stage) | 9.34673 | 10.1621 | 6.98587 | 11.1562 |
NOD | Developing tillers at six leaf stage, 3rd internode | 0.60664 | 1.01506 | 2.61977 | 4.28868 |
CAR5 | Developing grain, bracts removed (5 DPA) | 10.4526 | 8.7548 | 9.37188 | 8.53758 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.26009 | 0.884047 | 1.77551 | 2.50801 |
CDS Structure of MLOC_18047
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_18047.2
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os04g43150.2 |
+3 |
6e-84 |
268 |
173/263 (66%) |
13104.m04276 protein nuclear transport factor 2, putative, expressed |
TAIR PP10 |
AT5G43960.2 |
+3 |
3e-17 |
83 |
77/253 (30%) |
Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:17689154-17691220 REVERSE LENGTH=391 |