MLOC_18047 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains7.568586.808754.886436.3574
LEAShoots from the seedlings (10 cm shoot stage)1.858330.7532740.9393691.04709
INF1Young developing inflorescences (5mm)24.62728.899725.231620.777
INF2Developing inflorescences (1-1.5 cm)26.054728.537825.796727.7691
ROORoots from the seedlings (10 cm shoot stage)9.3467310.16216.9858711.1562
NODDeveloping tillers at six leaf stage, 3rd internode0.606641.015062.619774.28868
CAR5Developing grain, bracts removed (5 DPA)10.45268.75489.371888.53758
CAR15Developing grain, bracts removed (15 DPA)1.260090.8840471.775512.50801



CDS Structure of MLOC_18047






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_18047.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_18047.2CUST_9641_PI427708080AvailableAvailablecontig_1579053 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g43150.2 +3 6e-84 268 173/263 (66%) 13104.m04276 protein nuclear transport factor 2, putative, expressed
TAIR PP10 AT5G43960.2 +3 3e-17 83 77/253 (30%) Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain | chr5:17689154-17691220 REVERSE LENGTH=391