MLOC_180 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains2.569821.34031.533381.60484
LEAShoots from the seedlings (10 cm shoot stage)1.819470.941031.334431.18655
INF1Young developing inflorescences (5mm)2.811623.248323.063532.40051
INF2Developing inflorescences (1-1.5 cm)3.680684.430194.140614.05394
ROORoots from the seedlings (10 cm shoot stage)2.410261.750512.193232.1286
NODDeveloping tillers at six leaf stage, 3rd internode2.7951.263692.502144.58174
CAR5Developing grain, bracts removed (5 DPA)2.714723.339523.951612.81849
CAR15Developing grain, bracts removed (15 DPA)1.629751.179371.424722.93858



CDS Structure of MLOC_180






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_180.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_180.2CUST_2591_PI427708083AvailableAvailablecontig_10114 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g40630.2 +1 7e-75 230 113/139 (81%) 13101.m04160 protein uncharacterized protein PA4923, putative, expressed
TAIR PP10 AT3G53450.1 +1 1e-53 176 88/122 (72%) Putative lysine decarboxylase family protein | chr3:19812977-19815430 REVERSE LENGTH=215