MLOC_17999 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.610929.201629.561926.145
LEAShoots from the seedlings (10 cm shoot stage)9.468654.290414.081714.99857
INF1Young developing inflorescences (5mm)18.131417.836615.400313.3355
INF2Developing inflorescences (1-1.5 cm)13.735613.755113.784913.9891
ROORoots from the seedlings (10 cm shoot stage)14.831321.834823.133523.0974
NODDeveloping tillers at six leaf stage, 3rd internode5.462594.898953.3872714.9595
CAR5Developing grain, bracts removed (5 DPA)18.218818.520118.730816.6159
CAR15Developing grain, bracts removed (15 DPA)6.255075.755926.0829212.6747



CDS Structure of MLOC_17999






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17999.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249445.1NoneNoneNoneNone
MLOC_17999.1CUST_17951_PI427708080AvailableAvailablecontig_1578852 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g34530.1 +2 0.0 573 316/421 (75%) 13102.m03740 protein OsPDIL5-3 protein disulfide isomerase PDIL5-3, expressed
TAIR PP10 AT1G35620.1 +2 4e-135 410 205/383 (54%) | Symbols: ATPDIL5-2, ATPDI8, PDI8, PDIL5-2 | PDI-like 5-2 | chr1:13156504-13158280 FORWARD LENGTH=440