MLOC_17941 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains52.113989.731397.857863.8379
LEAShoots from the seedlings (10 cm shoot stage)77.612872.707351.927348.8289
INF1Young developing inflorescences (5mm)106.806108.66102.30470.2326
INF2Developing inflorescences (1-1.5 cm)84.932283.443577.768975.2472
ROORoots from the seedlings (10 cm shoot stage)44.752883.212765.251870.838
NODDeveloping tillers at six leaf stage, 3rd internode43.66529.172420.560878.7829
CAR5Developing grain, bracts removed (5 DPA)44.854941.146848.282734.1753
CAR15Developing grain, bracts removed (15 DPA)16.330113.12610.735126.0347



CDS Structure of MLOC_17941






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17941.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_17941.1CUST_11552_PI427708083AvailableAvailablecontig_1578640 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g31380.1 +2 3e-83 267 129/138 (93%) 13107.m03173 protein NAD-dependent malic enzyme, mitochondrial precursor, putative, expressed
TAIR PP10 AT2G13560.1 +2 2e-82 264 128/138 (93%) | Symbols: NAD-ME1 | NAD-dependent malic enzyme 1 | chr2:5650089-5655103 FORWARD LENGTH=623