- Predicted Gene MLOC_17901
MLOC_17901 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_17901_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_17901_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
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Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 24.7945 | 11.8977 | 17.3953 | 17.1041 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 5.28333 | 0.4778 | 1.4564 | 2.25355 |
INF1 | Young developing inflorescences (5mm) | 34.5006 | 40.182 | 40.7911 | 32.4814 |
INF2 | Developing inflorescences (1-1.5 cm) | 23.691 | 34.9227 | 29.8933 | 33.5517 |
ROO | Roots from the seedlings (10 cm shoot stage) | 9.97859 | 14.8542 | 13.1061 | 18.4215 |
NOD | Developing tillers at six leaf stage, 3rd internode | 1.11504 | 1.05765 | 0.177715 | 3.28124 |
CAR5 | Developing grain, bracts removed (5 DPA) | 23.1157 | 24.9117 | 25.0448 | 24.4363 |
CAR15 | Developing grain, bracts removed (15 DPA) | 6.49309 | 4.93389 | 5.16127 | 13.205 |
CDS Structure of MLOC_17901
Members of Gene Cluster
This cluster has a confidence assignment of
non-High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_17901.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g01350.2 |
+2 |
3e-62 |
195 |
114/127 (90%) |
13101.m14979 protein SNF7 domain containing protein, putative, expressed |
TAIR PP10 |
AT3G10640.2 |
+2 |
2e-48 |
159 |
95/129 (74%) |
| Symbols: VPS60.1 | SNF7 family protein | chr3:3323501-3324484 REVERSE LENGTH=170 |