MLOC_17901 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains24.794511.897717.395317.1041
LEAShoots from the seedlings (10 cm shoot stage)5.283330.47781.45642.25355
INF1Young developing inflorescences (5mm)34.500640.18240.791132.4814
INF2Developing inflorescences (1-1.5 cm)23.69134.922729.893333.5517
ROORoots from the seedlings (10 cm shoot stage)9.9785914.854213.106118.4215
NODDeveloping tillers at six leaf stage, 3rd internode1.115041.057650.1777153.28124
CAR5Developing grain, bracts removed (5 DPA)23.115724.911725.044824.4363
CAR15Developing grain, bracts removed (15 DPA)6.493094.933895.1612713.205



CDS Structure of MLOC_17901






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17901.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_17901.1CUST_2579_PI427708083AvailableAvailablecontig_1578499 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g01350.2 +2 3e-62 195 114/127 (90%) 13101.m14979 protein SNF7 domain containing protein, putative, expressed
TAIR PP10 AT3G10640.2 +2 2e-48 159 95/129 (74%) | Symbols: VPS60.1 | SNF7 family protein | chr3:3323501-3324484 REVERSE LENGTH=170