MLOC_17893 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains38.829224.485330.243330.6647
LEAShoots from the seedlings (10 cm shoot stage)132.36727.133821.935853.6661
INF1Young developing inflorescences (5mm)5.140415.317734.719984.56998
INF2Developing inflorescences (1-1.5 cm)26.195327.411341.751335.2429
ROORoots from the seedlings (10 cm shoot stage)192.44682.680996.0432125.546
NODDeveloping tillers at six leaf stage, 3rd internode0.2842971.53950.2826674.57378
CAR5Developing grain, bracts removed (5 DPA)81.53177.097359.158476.4823
CAR15Developing grain, bracts removed (15 DPA)71.356173.9659.9094171.196



CDS Structure of MLOC_17893






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17893.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371484NoneNoneNoneNone
MLOC_17893.1CUST_1732_PI427708080AvailableAvailablecontig_1578472 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g46900.1 +2 5e-155 447 232/267 (87%) 13106.m04963 protein phosphosulfolactate synthase-related protein, putative, expressed
TAIR PP10 AT4G21320.1 +2 2e-113 339 173/251 (69%) | Symbols: HSA32 | Aldolase-type TIM barrel family protein | chr4:11340492-11341732 FORWARD LENGTH=286