MLOC_17871 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.1327490.1863390.1706390.195693
LEAShoots from the seedlings (10 cm shoot stage)01.296280.4130880.810684
INF1Young developing inflorescences (5mm)0.0263676000.0245692
INF2Developing inflorescences (1-1.5 cm)0.05412190.05054260.06779440.0666329
ROORoots from the seedlings (10 cm shoot stage)0.5583830.1759450.7203690.370186
NODDeveloping tillers at six leaf stage, 3rd internode0.022589400.009255770.0142847
CAR5Developing grain, bracts removed (5 DPA)000.03203030.0331648
CAR15Developing grain, bracts removed (15 DPA)00.05955940.03958370.188056



CDS Structure of MLOC_17871






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17871.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354611NoneNoneNoneNone
MLOC_17871.1CUST_141_PI427708083AvailableAvailablecontig_1578345 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g10510.1 +1 0.0 538 257/309 (83%) 13111.m01117 protein dehydrogenase, putative, expressed
TAIR PP10 AT1G77120.1 +1 1e-167 483 228/307 (74%) | Symbols: ADH1, ADH, ATADH, ATADH1 | alcohol dehydrogenase 1 | chr1:28975509-28977216 FORWARD LENGTH=379