- Predicted Gene MLOC_17870
MLOC_17870 FPKM values
FPKM by Treatment | FPKM by Replicate |
![](/morexGenes/blast_net_images/MLOC_17870_assembly3_WGSMorex_rbca.fasta_treatments.fpkms.png)
| ![](/morexGenes/blast_net_images/MLOC_17870_assembly3_WGSMorex_rbca.fasta_replicates.fpkms.png)
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 10.5425 | 6.99264 | 9.51875 | 9.87668 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 4.94672 | 6.77688 | 8.55488 | 6.38593 |
INF1 | Young developing inflorescences (5mm) | 13.7482 | 14.3518 | 16.7654 | 14.7211 |
INF2 | Developing inflorescences (1-1.5 cm) | 13.6427 | 14.4648 | 19.8216 | 19.8108 |
ROO | Roots from the seedlings (10 cm shoot stage) | 11.5249 | 11.6302 | 18.6004 | 17.9305 |
NOD | Developing tillers at six leaf stage, 3rd internode | 8.05405 | 4.99923 | 5.97528 | 15.6487 |
CAR5 | Developing grain, bracts removed (5 DPA) | 6.09695 | 7.31548 | 7.73285 | 8.44498 |
CAR15 | Developing grain, bracts removed (15 DPA) | 2.31155 | 2.02243 | 1.60739 | 5.619 |
CDS Structure of MLOC_17870
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_17870.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os09g19750.2 |
+2 |
8e-38 |
131 |
57/73 (78%) |
13109.m01859 protein expressed protein |
TAIR PP10 |
AT4G33100.1 |
+2 |
5e-19 |
81 |
33/66 (50%) |
CONTAINS InterPro DOMAIN/s: Mitochondrial distribution/morphology family 35/apoptosis (InterPro:IPR007918); Has 214 Blast hits to 214 proteins in 102 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 69; Plants - 29; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr4:15971701-15972342 FORWARD LENGTH=92 |