MLOC_17865 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains408.254322.627356.95364.381
LEAShoots from the seedlings (10 cm shoot stage)490.144647.941613.623522.784
INF1Young developing inflorescences (5mm)211.698240.579255.803205.662
INF2Developing inflorescences (1-1.5 cm)331.995348.703331.917379.472
ROORoots from the seedlings (10 cm shoot stage)1244.921202.37942.9021482.57
NODDeveloping tillers at six leaf stage, 3rd internode448.483732.196622.2162612.69
CAR5Developing grain, bracts removed (5 DPA)1242.061248.021279.031232.91
CAR15Developing grain, bracts removed (15 DPA)252.042241.802281.149597.062



CDS Structure of MLOC_17865






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17865.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_17865.1CUST_2573_PI427708083AvailableAvailablecontig_157833 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g49200.2 -2 0.0 600 295/338 (87%) 13105.m05261 protein aspartic proteinase oryzasin-1 precursor, putative, expressed
TAIR PP10 AT1G11910.1 -2 0.0 523 259/339 (76%) | Symbols: APA1, ATAPA1 | aspartic proteinase A1 | chr1:4017119-4019874 REVERSE LENGTH=506