MLOC_17861 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.18186.248245.593966.53723
LEAShoots from the seedlings (10 cm shoot stage)00.15830500.106272
INF1Young developing inflorescences (5mm)0.3392870.46478800.366924
INF2Developing inflorescences (1-1.5 cm)0.4550240.3777980.1556310.378091
ROORoots from the seedlings (10 cm shoot stage)0.7288430.815290.2337620.765282
NODDeveloping tillers at six leaf stage, 3rd internode0.11941900.04711690.0397517
CAR5Developing grain, bracts removed (5 DPA)0.3980290.2243620.1609830.249679
CAR15Developing grain, bracts removed (15 DPA)2198.063340.991394.575729.18



CDS Structure of MLOC_17861






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17861.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374120NoneNoneNoneNone
MLOC_17861.1CUST_1728_PI427708080AvailableAvailablecontig_1578320 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g02389.1 -1 1e-39 137 63/96 (66%) 13111.m00165 protein protease inhibitor/seed storage/LTP family, putative, expressed
TAIR PP10 AT3G08770.1 -1 7e-21 86 44/94 (47%) | Symbols: LTP6 | lipid transfer protein 6 | chr3:2664349-2664784 REVERSE LENGTH=113