MLOC_17849 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains26.418620.838223.343724.4688
LEAShoots from the seedlings (10 cm shoot stage)20.248418.016720.018918.0014
INF1Young developing inflorescences (5mm)16.78416.334416.012814.4667
INF2Developing inflorescences (1-1.5 cm)12.186410.490611.483513.197
ROORoots from the seedlings (10 cm shoot stage)20.856921.455721.802829.7422
NODDeveloping tillers at six leaf stage, 3rd internode40.319828.257132.6943106.533
CAR5Developing grain, bracts removed (5 DPA)16.237916.435117.70817.9531
CAR15Developing grain, bracts removed (15 DPA)5.688475.145555.6417613.3735



CDS Structure of MLOC_17849






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17849.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK252351.1NoneNoneNoneNone
MLOC_17849.1CUST_17950_PI427708080AvailableAvailablecontig_157829 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g23610.1 -2 9e-65 207 124/160 (78%) 13105.m02403 protein protein phosphatase inhibitor 2 containing protein, expressed
TAIR PP10 AT5G52200.1 -2 9e-35 128 75/176 (43%) phosphoprotein phosphatase inhibitors | chr5:21202818-21204719 REVERSE LENGTH=191