MLOC_17841 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.707190.2947050.3604790.436269
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_17841






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17841.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_17841.1CUST_9620_PI427708080AvailableAvailablecontig_1578274 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g46210.1 -1 9e-145 422 219/348 (63%) 13101.m04747 protein GDSL-like lipase/acylhydrolase, putative
TAIR PP10 AT1G28600.1 -1 2e-81 259 148/345 (43%) GDSL-like Lipase/Acylhydrolase superfamily protein | chr1:10051228-10053073 REVERSE LENGTH=393