MLOC_17825 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.303310.10889.652969.91767
LEAShoots from the seedlings (10 cm shoot stage)11.00668.216089.218798.1194
INF1Young developing inflorescences (5mm)14.027912.667912.314410.2201
INF2Developing inflorescences (1-1.5 cm)10.195311.091111.802411.2443
ROORoots from the seedlings (10 cm shoot stage)5.470858.425097.692559.54221
NODDeveloping tillers at six leaf stage, 3rd internode5.696126.664527.5714822.5145
CAR5Developing grain, bracts removed (5 DPA)10.774112.107611.792710.7475
CAR15Developing grain, bracts removed (15 DPA)6.121486.228196.0126212.7253



CDS Structure of MLOC_17825






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17825.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_17825.1CUST_9618_PI427708080AvailableAvailablecontig_1578202 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g28310.1 -1 0.0 738 385/545 (71%) 13103.m03304 protein dnaJ domain containing protein, expressed
TAIR PP10 AT5G53150.1 -1 1e-88 297 146/323 (45%) DNAJ heat shock N-terminal domain-containing protein | chr5:21554935-21557202 FORWARD LENGTH=726