MLOC_17796 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains25.838129.223929.146326.2287
LEAShoots from the seedlings (10 cm shoot stage)50.49827.045432.984230.1543
INF1Young developing inflorescences (5mm)16.955712.070112.199511.1737
INF2Developing inflorescences (1-1.5 cm)8.95919.7779510.49059.72204
ROORoots from the seedlings (10 cm shoot stage)3.919175.346399.138585.91528
NODDeveloping tillers at six leaf stage, 3rd internode28.212719.944728.494364.3201
CAR5Developing grain, bracts removed (5 DPA)13.684213.840716.509312.7645
CAR15Developing grain, bracts removed (15 DPA)9.690657.31798.4391518.6718



CDS Structure of MLOC_17796






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17796.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251889.1NoneNoneNoneNone
MLOC_17796.1CUST_17949_PI427708080AvailableAvailablecontig_1578078 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g38110.2 +3 1e-156 447 228/272 (84%) 13107.m03935 protein tic20, putative, expressed
TAIR PP10 AT1G04940.1 +3 1e-56 190 89/192 (46%) | Symbols: TIC20 | translocon at the inner envelope membrane of chloroplasts 20 | chr1:1399588-1400616 FORWARD LENGTH=274