MLOC_17795 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.4623870.7820310.4815620.668423
LEAShoots from the seedlings (10 cm shoot stage)0.14400200.3805030.246445
INF1Young developing inflorescences (5mm)3.238382.938512.905392.50266
INF2Developing inflorescences (1-1.5 cm)8.5925611.03427.4796110.0418
ROORoots from the seedlings (10 cm shoot stage)0.1589290.08367790.2691260.153463
NODDeveloping tillers at six leaf stage, 3rd internode1.269723.02741.372638.30497
CAR5Developing grain, bracts removed (5 DPA)9.290459.443147.553118.46512
CAR15Developing grain, bracts removed (15 DPA)1.176860.4388591.483962.21187



CDS Structure of MLOC_17795






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17795.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_17795.2CUST_2562_PI427708083AvailableAvailablecontig_1578075 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g26560.1 +2 9e-43 156 77/96 (80%) 13110.m02264 protein expressed protein
TAIR PP10 AT2G46980.2 +2 1e-18 86 43/95 (45%) unknown protein; Has 3995 Blast hits to 3325 proteins in 374 species: Archae - 19; Bacteria - 205; Metazoa - 2201; Fungi - 364; Plants - 149; Viruses - 22; Other Eukaryotes - 1035 (source: NCBI BLink). | chr2:19299868-19303429 REVERSE LENGTH=793