MLOC_17764 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.347446.563715.279765.18709
LEAShoots from the seedlings (10 cm shoot stage)3.446562.388732.594092.41908
INF1Young developing inflorescences (5mm)21.588221.864120.182716.7962
INF2Developing inflorescences (1-1.5 cm)27.417227.114323.076427.575
ROORoots from the seedlings (10 cm shoot stage)1.353334.51973.452744.60872
NODDeveloping tillers at six leaf stage, 3rd internode0.4829440.3858160.5643691.40794
CAR5Developing grain, bracts removed (5 DPA)8.126666.851578.468137.13174
CAR15Developing grain, bracts removed (15 DPA)2.401082.368341.93424.87355



CDS Structure of MLOC_17764






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17764.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK371043NoneNoneNoneNone
MLOC_17764.1CUST_1718_PI427708080AvailableAvailablecontig_157796 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g08660.1 +2 0.0 1203 633/865 (73%) 13111.m00912 protein TOPBP1A - Similar to DNA replication protein TOPBP1 from, expressed
TAIR PP10 AT1G77320.1 +2 0.0 654 386/1003 (38%) | Symbols: MEI1 | transcription coactivators | chr1:29056740-29062710 FORWARD LENGTH=972