MLOC_17743 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0000
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0000
NODDeveloping tillers at six leaf stage, 3rd internode00.069458900.482584
CAR5Developing grain, bracts removed (5 DPA)0.08064450.07518720.1619440.139996
CAR15Developing grain, bracts removed (15 DPA)0.512490.3594090.5590121.19699



CDS Structure of MLOC_17743






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17743.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_17743.1CUST_2553_PI427708083AvailableAvailablecontig_1577876 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g01590.1 +2 1e-89 281 144/219 (66%) 13102.m00080 protein glycosyl hydrolases, putative, expressed
TAIR PP10 AT1G12240.1 +2 8e-59 198 109/213 (51%) | Symbols: ATBETAFRUCT4, VAC-INV | Glycosyl hydrolases family 32 protein | chr1:4153699-4157457 FORWARD LENGTH=664