MLOC_17719 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains922.604599.203566.401684.06
LEAShoots from the seedlings (10 cm shoot stage)342.751160.623197.365194.818
INF1Young developing inflorescences (5mm)1015.91995.2011013.65892.428
INF2Developing inflorescences (1-1.5 cm)689.4619.159677.566754.281
ROORoots from the seedlings (10 cm shoot stage)497.782572.348637.604666.958
NODDeveloping tillers at six leaf stage, 3rd internode82.255872.9761171.207274.346
CAR5Developing grain, bracts removed (5 DPA)314.707346.685334.042340.801
CAR15Developing grain, bracts removed (15 DPA)96.303693.804683.0355228.915



CDS Structure of MLOC_17719






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17719.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK374857NoneNoneNoneNone
MLOC_17719.1CUST_1716_PI427708080AvailableAvailablecontig_1577792 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g27769.1 -1 9e-49 157 85/86 (99%) 13102.m03030 protein 40S ribosomal protein S27, putative, expressed
TAIR PP10 AT3G61110.1 -1 6e-47 152 80/86 (93%) | Symbols: ARS27A, RS27A | ribosomal protein S27 | chr3:22611710-22612632 FORWARD LENGTH=86