MLOC_17606 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.3943912.051783.730792.52619
LEAShoots from the seedlings (10 cm shoot stage)0.19946100.3622520.306558
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)00.2607780.3828540.533108
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.125957000.11266
CAR15Developing grain, bracts removed (15 DPA)0000



CDS Structure of MLOC_17606






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17606.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_17606.1CUST_2535_PI427708083AvailableAvailablecontig_1577306 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g08000.1 -1 3e-38 138 69/72 (96%) 13107.m00790 protein expressed protein
TAIR PP10 AT1G54510.3 -1 1e-33 125 62/72 (86%) | Symbols: NEK1 | NIMA-related serine/threonine kinase 1 | chr1:20358603-20362006 REVERSE LENGTH=612