MLOC_17595 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.842833.262583.114893.22359
LEAShoots from the seedlings (10 cm shoot stage)1.988820.3253290.3024480.799664
INF1Young developing inflorescences (5mm)17.309816.594613.877314.5571
INF2Developing inflorescences (1-1.5 cm)14.220114.087112.34115.5491
ROORoots from the seedlings (10 cm shoot stage)0.4493952.110932.080862.53101
NODDeveloping tillers at six leaf stage, 3rd internode0.05874150.02715270.01237050.0845809
CAR5Developing grain, bracts removed (5 DPA)3.480723.015892.554693.0966
CAR15Developing grain, bracts removed (15 DPA)1.375470.8013021.054392.68677



CDS Structure of MLOC_17595






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17595.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_17595.1CUST_9592_PI427708080AvailableAvailablecontig_1577243 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g58630.3 +2 0.0 620 340/431 (79%) 13104.m06161 protein DNA mismatch repair protein MSH3, putative, expressed
TAIR PP10 AT4G25540.1 +2 2e-122 384 228/434 (53%) | Symbols: MSH3, ATMSH3 | homolog of DNA mismatch repair protein MSH3 | chr4:13042700-13048115 REVERSE LENGTH=1081