MLOC_17585 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains14.576815.691716.268111.5401
LEAShoots from the seedlings (10 cm shoot stage)23.749945.05428.559420.4138
INF1Young developing inflorescences (5mm)6.977447.131077.140184.47238
INF2Developing inflorescences (1-1.5 cm)4.197515.184985.770694.09895
ROORoots from the seedlings (10 cm shoot stage)17.345519.164225.252416.8608
NODDeveloping tillers at six leaf stage, 3rd internode23.646916.808819.057447.4496
CAR5Developing grain, bracts removed (5 DPA)10.313612.58114.31148.59554
CAR15Developing grain, bracts removed (15 DPA)7.669266.113366.8984111.8853



CDS Structure of MLOC_17585






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17585.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK354242NoneNoneNoneNone
MLOC_17585.1CUST_1710_PI427708080AvailableAvailablecontig_1577176 (Not mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g45200.2 -1 0.0 534 271/333 (81%) 13104.m04530 protein DNA binding protein, putative, expressed
TAIR PP10 AT3G60590.2 -1 4e-91 291 159/289 (55%) unknown protein; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr3:22398764-22399753 FORWARD LENGTH=329