MLOC_17573 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains104.49389.713587.597598.7999
LEAShoots from the seedlings (10 cm shoot stage)32.958719.153816.46819.9592
INF1Young developing inflorescences (5mm)43.383548.918951.302343.843
INF2Developing inflorescences (1-1.5 cm)54.715840.957745.951154.3481
ROORoots from the seedlings (10 cm shoot stage)96.573883.883477.5671106.444
NODDeveloping tillers at six leaf stage, 3rd internode124.53201.349121.718650.91
CAR5Developing grain, bracts removed (5 DPA)63.135462.47164.673566.243
CAR15Developing grain, bracts removed (15 DPA)78.030769.247979.4527187.236



CDS Structure of MLOC_17573






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17573.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK359433NoneNoneNoneNone
MLOC_17573.1CUST_1709_PI427708080AvailableAvailablecontig_1577122 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g07570.4 +2 0.0 797 409/462 (89%) 13103.m12933 protein aminotransferase, putative, expressed
TAIR PP10 AT4G39660.1 +2 0.0 717 347/436 (80%) | Symbols: AGT2 | alanine:glyoxylate aminotransferase 2 | chr4:18406797-18409262 FORWARD LENGTH=476