MLOC_17545 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2213750.193450.08626110.178556
LEAShoots from the seedlings (10 cm shoot stage)2.204221.081131.19741.21689
INF1Young developing inflorescences (5mm)0.03439480.019917300.0258795
INF2Developing inflorescences (1-1.5 cm)0.01787480.01712210.06554440.0388249
ROORoots from the seedlings (10 cm shoot stage)6.46279.420233.316549.27271
NODDeveloping tillers at six leaf stage, 3rd internode98.271692.6797111.202261.669
CAR5Developing grain, bracts removed (5 DPA)0.2031130.02139730.08651690.104705
CAR15Developing grain, bracts removed (15 DPA)0.144050.05506140.04599530.227861



CDS Structure of MLOC_17545






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17545.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK250758.1NoneNoneNoneNone
MLOC_17545.2CUST_1707_PI427708080AvailableAvailablecontig_1577012 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g16610.1 +2 0.0 969 460/548 (84%) 13103.m01973 protein laccase precursor protein, putative, expressed
TAIR PP10 AT5G60020.1 +2 0.0 805 380/559 (68%) | Symbols: LAC17, ATLAC17 | laccase 17 | chr5:24168072-24170223 FORWARD LENGTH=577