- Predicted Gene MLOC_17531
MLOC_17531 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 46.0897 | 41.7755 | 43.2319 | 39.5347 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 31.0311 | 34.434 | 35.868 | 26.2924 |
INF1 | Young developing inflorescences (5mm) | 39.5044 | 41.7416 | 39.8752 | 31.0371 |
INF2 | Developing inflorescences (1-1.5 cm) | 42.6248 | 35.3179 | 41.7292 | 40.2532 |
ROO | Roots from the seedlings (10 cm shoot stage) | 36.7975 | 48.0988 | 58.142 | 50.6372 |
NOD | Developing tillers at six leaf stage, 3rd internode | 47.2692 | 31.0602 | 38.8599 | 103.397 |
CAR5 | Developing grain, bracts removed (5 DPA) | 19.6032 | 18.7618 | 20.8295 | 17.6228 |
CAR15 | Developing grain, bracts removed (15 DPA) | 6.20439 | 6.88448 | 5.91852 | 13.874 |
CDS Structure of MLOC_17531
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_17531.1
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g15448.1 |
+3 |
1e-52 |
173 |
82/94 (87%) |
13101.m01706 protein expressed protein |
TAIR PP10 |
AT5G16950.1 |
+3 |
8e-21 |
87 |
41/99 (41%) |
unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5572640-5572939 FORWARD LENGTH=99 |