MLOC_17531 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains46.089741.775543.231939.5347
LEAShoots from the seedlings (10 cm shoot stage)31.031134.43435.86826.2924
INF1Young developing inflorescences (5mm)39.504441.741639.875231.0371
INF2Developing inflorescences (1-1.5 cm)42.624835.317941.729240.2532
ROORoots from the seedlings (10 cm shoot stage)36.797548.098858.14250.6372
NODDeveloping tillers at six leaf stage, 3rd internode47.269231.060238.8599103.397
CAR5Developing grain, bracts removed (5 DPA)19.603218.761820.829517.6228
CAR15Developing grain, bracts removed (15 DPA)6.204396.884485.9185213.874



CDS Structure of MLOC_17531






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17531.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249681.1NoneNoneNoneNone
MLOC_17531.1CUST_1705_PI427708080AvailableAvailablecontig_1576982 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g15448.1 +3 1e-52 173 82/94 (87%) 13101.m01706 protein expressed protein
TAIR PP10 AT5G16950.1 +3 8e-21 87 41/99 (41%) unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | chr5:5572640-5572939 FORWARD LENGTH=99