MLOC_17499 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.5634130.4202180.09983070.354185
LEAShoots from the seedlings (10 cm shoot stage)0.7068430.8757430.9689810.644676
INF1Young developing inflorescences (5mm)2.606662.87914.108522.89268
INF2Developing inflorescences (1-1.5 cm)2.379482.39381.564342.49778
ROORoots from the seedlings (10 cm shoot stage)0.4177030.4416460.06546540.385883
NODDeveloping tillers at six leaf stage, 3rd internode0.0947440.787240.08521411.47808
CAR5Developing grain, bracts removed (5 DPA)1.368321.802141.714531.64736
CAR15Developing grain, bracts removed (15 DPA)0.01707220.02051290.02429450.0532464



CDS Structure of MLOC_17499






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17499.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375790NoneNoneNoneNone
MLOC_17499.1CUST_1701_PI427708080AvailableAvailablecontig_157691 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g49920.1 +1 0.0 811 423/486 (87%) 13102.m05669 protein 3-ketoacyl-CoA synthase, putative, expressed
TAIR PP10 AT1G25450.1 +1 0.0 561 283/490 (58%) | Symbols: KCS5, CER60 | 3-ketoacyl-CoA synthase 5 | chr1:8938679-8940282 REVERSE LENGTH=492