MLOC_17477 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.829456.490235.979336.29203
LEAShoots from the seedlings (10 cm shoot stage)2.677260.2334490.4706010.902252
INF1Young developing inflorescences (5mm)21.747521.948217.453319.0634
INF2Developing inflorescences (1-1.5 cm)25.547633.169224.076134.3944
ROORoots from the seedlings (10 cm shoot stage)4.025634.828525.358925.41085
NODDeveloping tillers at six leaf stage, 3rd internode0.06907250.1314460.08842410.315113
CAR5Developing grain, bracts removed (5 DPA)9.521428.636468.440239.47722
CAR15Developing grain, bracts removed (15 DPA)0.5844470.1319380.7204071.15094



CDS Structure of MLOC_17477






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17477.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375198NoneNoneNoneNone
MLOC_17477.1CUST_1700_PI427708080AvailableAvailablecontig_1576831 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g36890.1 -3 0.0 1848 1001/1231 (81%) 13112.m03784 protein CSLD4 - cellulose synthase-like family D, expressed
TAIR PP10 AT1G02730.1 -3 0.0 1541 843/1225 (69%) | Symbols: ATCSLD5, CSLD5, SOS6 | cellulose synthase-like D5 | chr1:594697-598473 REVERSE LENGTH=1181