MLOC_17457 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains17.051328.410227.300727.8664
LEAShoots from the seedlings (10 cm shoot stage)30.173524.349420.293324.9841
INF1Young developing inflorescences (5mm)86.439681.886582.977375.5554
INF2Developing inflorescences (1-1.5 cm)122.856119.176103.14141.194
ROORoots from the seedlings (10 cm shoot stage)12.346126.688718.753637.3988
NODDeveloping tillers at six leaf stage, 3rd internode18.568123.228824.1093104.577
CAR5Developing grain, bracts removed (5 DPA)40.769738.671943.544645.1386
CAR15Developing grain, bracts removed (15 DPA)18.966317.030915.64442.4647



CDS Structure of MLOC_17457






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17457.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_17457.1CUST_9567_PI427708080AvailableAvailablecontig_1576759 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g20410.1 -2 0.0 756 445/787 (57%) 13102.m02285 protein GTP binding protein, putative, expressed
TAIR PP10 AT5G46070.1 -2 0.0 650 386/785 (49%) Guanylate-binding family protein | chr5:18683468-18688397 FORWARD LENGTH=1082