MLOC_17382 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains15.432429.656429.757823.3545
LEAShoots from the seedlings (10 cm shoot stage)38.7239.256125.244226.6964
INF1Young developing inflorescences (5mm)30.836629.918625.730822.9794
INF2Developing inflorescences (1-1.5 cm)31.759231.334930.430432.0651
ROORoots from the seedlings (10 cm shoot stage)18.857630.523323.441229.4799
NODDeveloping tillers at six leaf stage, 3rd internode17.040716.543113.98545.1664
CAR5Developing grain, bracts removed (5 DPA)42.438639.001241.16737.1128
CAR15Developing grain, bracts removed (15 DPA)10.127311.08379.8180123.129



CDS Structure of MLOC_17382






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17382.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK249779.1NoneNoneNoneNone
MLOC_17382.1CUST_1696_PI427708080AvailableAvailablecontig_1576534 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os02g13560.4 -1 5e-135 411 205/216 (95%) 13102.m01506 protein transporter family protein, putative, expressed
TAIR PP10 AT4G35300.3 -1 4e-120 371 182/216 (84%) tonoplast monosaccharide transporter2 | chr4:16796432-16799071 REVERSE LENGTH=729