MLOC_17377 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains8.527367.01947.305818.15221
LEAShoots from the seedlings (10 cm shoot stage)12.05448.909118.305538.64029
INF1Young developing inflorescences (5mm)52.352558.417272.889959.1372
INF2Developing inflorescences (1-1.5 cm)37.792542.168143.697850.9127
ROORoots from the seedlings (10 cm shoot stage)14.337414.071915.446418.0785
NODDeveloping tillers at six leaf stage, 3rd internode6.224647.7618910.773827.8398
CAR5Developing grain, bracts removed (5 DPA)3.582583.766173.499774.05974
CAR15Developing grain, bracts removed (15 DPA)2.703061.486161.924765.42468



CDS Structure of MLOC_17377






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17377.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK251461.1NoneNoneNoneNone
MLOC_17377.2CUST_1695_PI427708080AvailableAvailablecontig_1576527 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os05g43820.3 -1 3e-135 391 192/208 (92%) 13105.m10320 protein ras-related protein, putative, expressed
TAIR PP10 AT4G28950.1 -1 9e-123 358 179/212 (84%) | Symbols: ARAC7, ATROP9, ATRAC7, RAC7, ROP9 | RHO-related protein from plants 9 | chr4:14278289-14279705 FORWARD LENGTH=209