MLOC_17369 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains19.582632.239925.162634.8896
LEAShoots from the seedlings (10 cm shoot stage)19.90855.633696.8789210.3043
INF1Young developing inflorescences (5mm)103.915105.613113.878108.255
INF2Developing inflorescences (1-1.5 cm)119.079108.107114.08154.801
ROORoots from the seedlings (10 cm shoot stage)4.284769.3803412.640315.5446
NODDeveloping tillers at six leaf stage, 3rd internode0.349120.4009690.3198481.63387
CAR5Developing grain, bracts removed (5 DPA)36.972640.502239.284751.0486
CAR15Developing grain, bracts removed (15 DPA)19.898723.891119.116259.7862



CDS Structure of MLOC_17369






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17369.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_17369.1CUST_2501_PI427708083AvailableAvailablecontig_157648 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g14580.1 -3 2e-17 83 87/189 (46%) 13103.m01705 protein expressed protein
TAIR PP10 AT1G19990.1 -3 1e-11 65 28/37 (76%) unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G11600.1); Has 11256 Blast hits to 7192 proteins in 541 species: Archae - 6; Bacteria - 629; Metazoa - 4714; Fungi - 936; Plants - 545; Viruses - 34; Other Eukaryotes - 4392 (source: NCBI BLink). | chr1:6935327-6936665 FORWARD LENGTH=251