MLOC_1735 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains00.2608820.4072081.16586
LEAShoots from the seedlings (10 cm shoot stage)0.3242510.3223080.402130.767392
INF1Young developing inflorescences (5mm)0.5313250.5330860.5631161.36271
INF2Developing inflorescences (1-1.5 cm)0.2402660.2154080.1058041.53262
ROORoots from the seedlings (10 cm shoot stage)0000.608769
NODDeveloping tillers at six leaf stage, 3rd internode0000.52843
CAR5Developing grain, bracts removed (5 DPA)0.09264260.08386010.09898141.28035
CAR15Developing grain, bracts removed (15 DPA)0.178200.2679221.16572



CDS Structure of MLOC_1735






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_1735.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_1735.1CUST_2496_PI427708083AvailableAvailablecontig_115534 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g03230.2 -3 3e-73 239 130/140 (93%) 13107.m00263 protein eukaryotic translation initiation factor 3 subunit C, putative, expressed
TAIR PP10 AT3G56150.2 -3 3e-51 177 88/121 (73%) | Symbols: EIF3C | eukaryotic translation initiation factor 3C | chr3:20833790-20836820 REVERSE LENGTH=900