MLOC_17343 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains3.691064.939394.921795.1503
LEAShoots from the seedlings (10 cm shoot stage)7.8310810.250910.70249.00794
INF1Young developing inflorescences (5mm)6.683786.761648.574276.34451
INF2Developing inflorescences (1-1.5 cm)13.721611.456711.626114.2624
ROORoots from the seedlings (10 cm shoot stage)2.484956.200634.89527.66735
NODDeveloping tillers at six leaf stage, 3rd internode7.053188.744479.761832.5401
CAR5Developing grain, bracts removed (5 DPA)8.085457.456137.57738.12111
CAR15Developing grain, bracts removed (15 DPA)7.70417.051048.2142118.0959



CDS Structure of MLOC_17343






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17343.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK363445NoneNoneNoneNone
MLOC_17343.2CUST_1692_PI427708080AvailableAvailablecontig_1576385 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g21450.1 +2 0.0 579 368/813 (45%) 13101.m02281 protein expressed protein
TAIR PP10 AT3G20320.1 +3 6e-20 82 48/112 (43%) | Symbols: TGD2 | trigalactosyldiacylglycerol2 | chr3:7087657-7089640 REVERSE LENGTH=381