MLOC_17300 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.873872.564712.200692.17866
LEAShoots from the seedlings (10 cm shoot stage)1.380091.253271.292411.09384
INF1Young developing inflorescences (5mm)6.355947.752675.678355.32279
INF2Developing inflorescences (1-1.5 cm)4.481374.683614.574734.7525
ROORoots from the seedlings (10 cm shoot stage)1.191811.695511.112871.82683
NODDeveloping tillers at six leaf stage, 3rd internode0.09110110.05945410.09781730.222157
CAR5Developing grain, bracts removed (5 DPA)1.975682.068262.080671.86799
CAR15Developing grain, bracts removed (15 DPA)0.4160910.2321320.3162430.718067



CDS Structure of MLOC_17300






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17300.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_17300.1CUST_9552_PI427708080AvailableAvailablecontig_1576243 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os08g04120.1 -2 0.0 740 393/687 (57%) 13108.m00382 protein expressed protein
TAIR PP10 AT3G07060.1 -2 8e-155 480 261/696 (38%) | Symbols: emb1974 | NHL domain-containing protein | chr3:2232760-2236913 FORWARD LENGTH=774