MLOC_17280 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.6283219.591416.174415.5684
LEAShoots from the seedlings (10 cm shoot stage)16.268716.65629.9276111.6822
INF1Young developing inflorescences (5mm)24.140420.160319.471818.7363
INF2Developing inflorescences (1-1.5 cm)28.676824.871627.681630.2222
ROORoots from the seedlings (10 cm shoot stage)2.9166211.206810.888111.7214
NODDeveloping tillers at six leaf stage, 3rd internode7.020333.030513.158728.56943
CAR5Developing grain, bracts removed (5 DPA)18.977718.276518.454618.5931
CAR15Developing grain, bracts removed (15 DPA)6.913556.201386.7948416.5183



CDS Structure of MLOC_17280






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17280.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_17280.1CUST_9550_PI427708080AvailableAvailablecontig_1576184 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g20630.1 -3 4e-36 136 66/83 (80%) 13110.m01696 protein vacuolar-sorting receptor precursor, putative, expressed
TAIR PP10 AT2G14720.2 -3 8e-28 112 55/81 (68%) | Symbols: VSR4, VSR2;1, BP80-2;1, MTV4 | vacuolar sorting receptor 4 | chr2:6300878-6304156 REVERSE LENGTH=628