MLOC_17211 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.8609951.94351.881831.74275
LEAShoots from the seedlings (10 cm shoot stage)2.18661.242650.8694711.29702
INF1Young developing inflorescences (5mm)5.07694.699464.442014.04378
INF2Developing inflorescences (1-1.5 cm)7.116986.184745.799337.07277
ROORoots from the seedlings (10 cm shoot stage)0.6561651.655240.9646561.92074
NODDeveloping tillers at six leaf stage, 3rd internode1.216051.460732.649685.81775
CAR5Developing grain, bracts removed (5 DPA)4.031573.474283.920933.73302
CAR15Developing grain, bracts removed (15 DPA)1.718342.147851.764944.23994



CDS Structure of MLOC_17211






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17211.14
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_17211.14CUST_9543_PI427708080AvailableAvailablecontig_157597 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g49180.1 +1 0.0 1314 698/937 (74%) 13101.m05113 protein ATP dependent DNA ligase family protein, putative, expressed
TAIR PP10 AT1G66730.1 +1 0.0 778 452/949 (48%) | Symbols: AtLIG6, LIG6 | DNA LIGASE 6 | chr1:24884991-24891823 FORWARD LENGTH=1396