- Predicted Gene MLOC_17211
MLOC_17211 FPKM values
FPKM by Treatment | FPKM by Replicate |
|
|
Treatment ID | Treatment Description | Rep 1 FPKM | Rep 2 FPKM | Rep 3 FPKM | Treatment FPKM |
---|
EMB | 4-day embryos dissected from germinating grains | 0.860995 | 1.9435 | 1.88183 | 1.74275 |
LEA | Shoots from the seedlings (10 cm shoot stage) | 2.1866 | 1.24265 | 0.869471 | 1.29702 |
INF1 | Young developing inflorescences (5mm) | 5.0769 | 4.69946 | 4.44201 | 4.04378 |
INF2 | Developing inflorescences (1-1.5 cm) | 7.11698 | 6.18474 | 5.79933 | 7.07277 |
ROO | Roots from the seedlings (10 cm shoot stage) | 0.656165 | 1.65524 | 0.964656 | 1.92074 |
NOD | Developing tillers at six leaf stage, 3rd internode | 1.21605 | 1.46073 | 2.64968 | 5.81775 |
CAR5 | Developing grain, bracts removed (5 DPA) | 4.03157 | 3.47428 | 3.92093 | 3.73302 |
CAR15 | Developing grain, bracts removed (15 DPA) | 1.71834 | 2.14785 | 1.76494 | 4.23994 |
CDS Structure of MLOC_17211
Members of Gene Cluster
This cluster has a confidence assignment of
High Confidence.
The gene has a transcript that is part of a cluster represented by
MLOC_17211.14
Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)
Database | Hit | Frame | E-value | Score | % Identity | Description |
---|
Rice PP6 |
LOC_Os01g49180.1 |
+1 |
0.0 |
1314 |
698/937 (74%) |
13101.m05113 protein ATP dependent DNA ligase family protein, putative, expressed |
TAIR PP10 |
AT1G66730.1 |
+1 |
0.0 |
778 |
452/949 (48%) |
| Symbols: AtLIG6, LIG6 | DNA LIGASE 6 | chr1:24884991-24891823 FORWARD LENGTH=1396 |