MLOC_17197 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains225.998272.386273.86267.883
LEAShoots from the seedlings (10 cm shoot stage)330.925171.127172.15200.007
INF1Young developing inflorescences (5mm)70.415660.478860.032454.2609
INF2Developing inflorescences (1-1.5 cm)54.299361.315573.163167.0248
ROORoots from the seedlings (10 cm shoot stage)183.89266.849238.002317.767
NODDeveloping tillers at six leaf stage, 3rd internode643.025360.811174.6821193.84
CAR5Developing grain, bracts removed (5 DPA)238.408255.031241.131239.942
CAR15Developing grain, bracts removed (15 DPA)48.913649.597351.6786111.587



CDS Structure of MLOC_17197






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17197.3
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK372021NoneNoneNoneNone
MLOC_17197.3CUST_1683_PI427708080AvailableAvailablecontig_1575917 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g37870.1 -1 0.0 801 398/423 (94%) 13112.m03899 protein ATP-grasp domain containing protein, expressed
TAIR PP10 AT1G09430.1 -1 0.0 754 372/420 (89%) | Symbols: ACLA-3 | ATP-citrate lyase A-3 | chr1:3042135-3044978 FORWARD LENGTH=424