MLOC_17175 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains5.4581723.253419.845622.2311
LEAShoots from the seedlings (10 cm shoot stage)22.14318.123911.026516.9337
INF1Young developing inflorescences (5mm)55.012149.1840.520245.497
INF2Developing inflorescences (1-1.5 cm)47.183551.084146.91760.5971
ROORoots from the seedlings (10 cm shoot stage)5.4889515.897411.595822.273
NODDeveloping tillers at six leaf stage, 3rd internode7.661348.436419.250934.4895
CAR5Developing grain, bracts removed (5 DPA)39.624233.009738.225340.9601
CAR15Developing grain, bracts removed (15 DPA)22.026319.37420.757652.5208



CDS Structure of MLOC_17175






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17175.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_17175.2CUST_9536_PI427708080AvailableAvailablecontig_1575850 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os07g07690.2 -1 0.0 800 518/927 (56%) 13107.m00758 protein PHD-finger domain containing protein, expressed
TAIR PP10 AT4G14920.1 -1 4e-66 243 175/426 (41%) Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein | chr4:8531157-8535842 REVERSE LENGTH=1138