MLOC_17007 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains20.524524.894124.544418.9282
LEAShoots from the seedlings (10 cm shoot stage)12.94791.22811.925864.69072
INF1Young developing inflorescences (5mm)70.864272.615679.142847.724
INF2Developing inflorescences (1-1.5 cm)58.021273.117263.069356.2694
ROORoots from the seedlings (10 cm shoot stage)6.7196315.598612.12312.9695
NODDeveloping tillers at six leaf stage, 3rd internode17.404413.54298.6042435.5112
CAR5Developing grain, bracts removed (5 DPA)35.817335.174839.209727.2438
CAR15Developing grain, bracts removed (15 DPA)55.622746.894249.646588.7322



CDS Structure of MLOC_17007






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_17007.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_17007.1CUST_11516_PI427708083AvailableAvailablecontig_1575265 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os12g41230.3 +1 3e-124 401 217/295 (74%) 13112.m04299 protein tesmin/TSO1-like CXC domain containing protein, expressed
TAIR PP10 AT4G14770.1 +1 2e-68 243 142/290 (49%) | Symbols: TCX2, ATTCX2 | TESMIN/TSO1-like CXC 2 | chr4:8481522-8484825 REVERSE LENGTH=674