MLOC_16843 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.6292170.1419580.4631990.375705
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0000
INF2Developing inflorescences (1-1.5 cm)0000
ROORoots from the seedlings (10 cm shoot stage)0.4476730.3769580.5548560.567275
NODDeveloping tillers at six leaf stage, 3rd internode0000
CAR5Developing grain, bracts removed (5 DPA)0.2831850.1605430.16810.231324
CAR15Developing grain, bracts removed (15 DPA)0.0222380.050319400.135149



CDS Structure of MLOC_16843






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16843.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_16843.1CUST_9489_PI427708080AvailableAvailablecontig_1574662 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os04g44950.1 -2 1e-146 425 210/302 (70%) 13104.m04498 protein short-chain dehydrogenase/reductase, putative, expressed
TAIR PP10 AT1G01800.1 -2 2e-81 256 132/300 (44%) NAD(P)-binding Rossmann-fold superfamily protein | chr1:293396-294888 FORWARD LENGTH=295