MLOC_16744 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains0.2853720.1772080.1566590.217607
LEAShoots from the seedlings (10 cm shoot stage)0000
INF1Young developing inflorescences (5mm)0.06725980.0268270.02881180.0375434
INF2Developing inflorescences (1-1.5 cm)1.609541.626222.234052.20984
ROORoots from the seedlings (10 cm shoot stage)0.06688240.072394100.119371
NODDeveloping tillers at six leaf stage, 3rd internode00.005594560.01603850.0414782
CAR5Developing grain, bracts removed (5 DPA)16.521819.461913.322318.8098
CAR15Developing grain, bracts removed (15 DPA)0.8243490.884110.7832672.26704



CDS Structure of MLOC_16744






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16744.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK376319NoneNoneNoneNone
MLOC_16744.1NoneAvailableAvailablecontig_1574355 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os10g29100.1 +2 8e-93 291 176/358 (49%) 13110.m02486 protein MBTB44 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain
TAIR PP10 AT3G06190.1 +2 6e-50 178 146/377 (39%) | Symbols: ATBPM2, BPM2 | BTB-POZ and MATH domain 2 | chr3:1874577-1876575 REVERSE LENGTH=406