MLOC_16724 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains12.492112.210314.864111.2958
LEAShoots from the seedlings (10 cm shoot stage)17.81227.472927.216517.7764
INF1Young developing inflorescences (5mm)16.370817.470219.715712.5997
INF2Developing inflorescences (1-1.5 cm)13.176314.136318.524814.1149
ROORoots from the seedlings (10 cm shoot stage)13.27321.713622.878721.023
NODDeveloping tillers at six leaf stage, 3rd internode25.212421.367633.611768.4801
CAR5Developing grain, bracts removed (5 DPA)12.469814.089413.894211.2552
CAR15Developing grain, bracts removed (15 DPA)9.4093210.415110.502719.2197



CDS Structure of MLOC_16724






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16724.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK375589NoneNoneNoneNone
MLOC_16724.2CUST_1651_PI427708080AvailableAvailablecontig_1574289 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g47540.1 +3 0.0 569 312/448 (70%) 13101.m04913 protein NLI interacting factor-like phosphatase, putative, expressed
TAIR PP10 AT5G46410.1 +3 6e-66 228 106/159 (67%) | Symbols: SSP4 | SCP1-like small phosphatase 4 | chr5:18826007-18828156 FORWARD LENGTH=453