MLOC_16701 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains1.698870.9359421.291811.36439
LEAShoots from the seedlings (10 cm shoot stage)0.499640.2650780.4073160.365702
INF1Young developing inflorescences (5mm)2.632583.841943.380213.4297
INF2Developing inflorescences (1-1.5 cm)2.973173.655324.202994.78467
ROORoots from the seedlings (10 cm shoot stage)3.150453.37623.851114.86047
NODDeveloping tillers at six leaf stage, 3rd internode0.09886470.1314380.1100070.44834
CAR5Developing grain, bracts removed (5 DPA)0.9826810.8753190.659211.00143
CAR15Developing grain, bracts removed (15 DPA)1.683421.529091.687244.62391



CDS Structure of MLOC_16701






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16701.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_16701.1CUST_9473_PI427708080AvailableAvailablecontig_1574234 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os06g41700.1 -3 2e-163 466 217/249 (87%) 13106.m04354 protein expansin precursor, putative, expressed
TAIR PP10 AT4G38210.1 -3 1e-97 297 135/229 (59%) | Symbols: ATEXPA20, EXP20, ATEXP20, ATHEXP ALPHA 1.23, EXPA20 | expansin A20 | chr4:17922975-17923821 REVERSE LENGTH=256