MLOC_16678 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains10.98212.722911.917310.6001
LEAShoots from the seedlings (10 cm shoot stage)3.461131.994742.630431.92816
INF1Young developing inflorescences (5mm)4.347345.361646.45784.2907
INF2Developing inflorescences (1-1.5 cm)8.541076.212727.53197.54717
ROORoots from the seedlings (10 cm shoot stage)17.8888.7596517.122210.3726
NODDeveloping tillers at six leaf stage, 3rd internode2.977321.804397.212535.9889
CAR5Developing grain, bracts removed (5 DPA)8.5231811.77788.926498.85523
CAR15Developing grain, bracts removed (15 DPA)1.811381.166642.088483.82062



CDS Structure of MLOC_16678






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16678.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_16678.1CUST_11501_PI427708083AvailableAvailablecontig_1574171 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g13390.2 +3 5e-35 133 82/98 (84%) 13103.m01551 protein oxidoreductase, aldo/keto reductase family protein, putative, expressed
TAIR PP10 AT1G59950.1 +3 9e-19 86 52/90 (58%) NAD(P)-linked oxidoreductase superfamily protein | chr1:22068033-22070588 REVERSE LENGTH=320