MLOC_16677 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains144.386134.412127.322128.554
LEAShoots from the seedlings (10 cm shoot stage)107.07960.711581.161867.476
INF1Young developing inflorescences (5mm)80.957284.00481.839164.8036
INF2Developing inflorescences (1-1.5 cm)59.732268.505361.715564.1044
ROORoots from the seedlings (10 cm shoot stage)155.486155.098112.132165.616
NODDeveloping tillers at six leaf stage, 3rd internode138.763133.54893.4396375.783
CAR5Developing grain, bracts removed (5 DPA)136.086128.35128.711116.729
CAR15Developing grain, bracts removed (15 DPA)19.738219.097118.457840.862



CDS Structure of MLOC_16677






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16677.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK358427NoneNoneNoneNone
MLOC_16677.1CUST_1647_PI427708080AvailableAvailablecontig_1574171 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g13380.1 +1 0.0 1014 547/569 (96%) 13103.m01550 protein transmembrane 9 superfamily member, putative, expressed
TAIR PP10 AT2G01970.1 +1 0.0 909 490/569 (86%) Endomembrane protein 70 protein family | chr2:452197-454819 REVERSE LENGTH=592