MLOC_16662 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains42.554925.978734.53429.6471
LEAShoots from the seedlings (10 cm shoot stage)29.42220.501923.811718.3257
INF1Young developing inflorescences (5mm)17.522821.459723.025915.6062
INF2Developing inflorescences (1-1.5 cm)21.911426.072126.746924.1762
ROORoots from the seedlings (10 cm shoot stage)65.734440.069138.337844.3934
NODDeveloping tillers at six leaf stage, 3rd internode82.70892.9444100.858236.504
CAR5Developing grain, bracts removed (5 DPA)28.870129.730932.500926.062
CAR15Developing grain, bracts removed (15 DPA)9.319329.112048.7662219.0063



CDS Structure of MLOC_16662






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16662.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK353836NoneNoneNoneNone
MLOC_16662.1CUST_1645_PI427708080AvailableAvailablecontig_1574117 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g63470.1 -2 5e-60 209 180/226 (80%) 13101.m06812 protein C2 domain containing protein, expressed
TAIR PP10 AT1G07310.1 -2 6e-28 117 68/141 (48%) Calcium-dependent lipid-binding (CaLB domain) family protein | chr1:2247775-2248833 REVERSE LENGTH=352