MLOC_16645 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains142.72293.2779107.12195.0541
LEAShoots from the seedlings (10 cm shoot stage)61.955262.542189.99252.9402
INF1Young developing inflorescences (5mm)32.779333.379636.721523.5274
INF2Developing inflorescences (1-1.5 cm)20.986524.442421.346920.6398
ROORoots from the seedlings (10 cm shoot stage)73.64482.320678.918382.4651
NODDeveloping tillers at six leaf stage, 3rd internode102.5993.56281.9982260.765
CAR5Developing grain, bracts removed (5 DPA)54.24464.053558.864647.2295
CAR15Developing grain, bracts removed (15 DPA)11.577911.386112.464821.9877



CDS Structure of MLOC_16645






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16645.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_16645.1NoneAvailableAvailablecontig_1574043 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g40470.1 -3 7e-21 92 44/49 (90%) 13101.m04144 protein vacuolar ATP synthase subunit d, putative, expressed
TAIR PP10 AT3G28715.2 -3 4e-20 89 41/49 (84%) ATPase, V0/A0 complex, subunit C/D | chr3:10778025-10780350 FORWARD LENGTH=343