MLOC_16643 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains121.362104.065111.555114.152
LEAShoots from the seedlings (10 cm shoot stage)70.419453.480272.235856.286
INF1Young developing inflorescences (5mm)33.412336.344528.967428.3618
INF2Developing inflorescences (1-1.5 cm)18.457319.598620.413522.387
ROORoots from the seedlings (10 cm shoot stage)62.133464.137955.874578.8134
NODDeveloping tillers at six leaf stage, 3rd internode57.14330.614530.4785103.223
CAR5Developing grain, bracts removed (5 DPA)41.500642.600144.454544.2605
CAR15Developing grain, bracts removed (15 DPA)7.107765.940178.4666316.5621



CDS Structure of MLOC_16643






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16643.2
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK357250NoneNoneNoneNone
MLOC_16643.2CUST_1643_PI427708080AvailableAvailablecontig_1574043 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g40570.1 +2 1e-175 498 250/274 (91%) 13101.m04152 protein outer mitochondrial membrane porin, putative, expressed
TAIR PP10 AT3G01280.1 +2 1e-109 329 165/273 (60%) | Symbols: VDAC1, ATVDAC1 | voltage dependent anion channel 1 | chr3:85754-87612 FORWARD LENGTH=276