MLOC_16584 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains581.13633.076633.476611.35
LEAShoots from the seedlings (10 cm shoot stage)66.7046149.192108.75486.0516
INF1Young developing inflorescences (5mm)6.705186.738845.324335.36453
INF2Developing inflorescences (1-1.5 cm)11.49076.360664.61458.38861
ROORoots from the seedlings (10 cm shoot stage)848.236773.956814.573850.969
NODDeveloping tillers at six leaf stage, 3rd internode16.646212.456213.935335.9098
CAR5Developing grain, bracts removed (5 DPA)283.966253.288268.054248.642
CAR15Developing grain, bracts removed (15 DPA)40.168656.381748.7921107.182



CDS Structure of MLOC_16584






Members of Gene Cluster

This cluster has a confidence assignment of non-High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16584.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_16584.1CUST_2391_PI427708083AvailableAvailablecontig_1573852 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os03g12290.1 -3 1e-60 197 90/98 (92%) 13103.m01401 protein glutamine synthetase, catalytic domain containing protein, expressed
TAIR PP10 AT5G37600.1 -3 2e-55 182 83/98 (85%) | Symbols: ATGSR1, GLN1;1, GSR 1, ATGLN1;1 | glutamine synthase clone R1 | chr5:14933574-14935656 REVERSE LENGTH=356