MLOC_16581 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains6.7897112.379113.401810.1358
LEAShoots from the seedlings (10 cm shoot stage)10.71739.280185.483656.94749
INF1Young developing inflorescences (5mm)3.473182.937543.0592.41632
INF2Developing inflorescences (1-1.5 cm)2.793922.283472.442992.52214
ROORoots from the seedlings (10 cm shoot stage)14.415722.923520.893724.1997
NODDeveloping tillers at six leaf stage, 3rd internode11.757413.707310.321442.0462
CAR5Developing grain, bracts removed (5 DPA)4.157783.982194.489893.71786
CAR15Developing grain, bracts removed (15 DPA)0.7519470.6577560.8434171.49205



CDS Structure of MLOC_16581






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16581.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
AK367350NoneNoneNoneNone
MLOC_16581.1CUST_1634_PI427708080AvailableAvailablecontig_1573848 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os11g11960.1 -2 0.0 1087 569/823 (69%) 13111.m01266 protein disease resistance protein RPM1, putative, expressed
TAIR PP10 AT3G07040.1 -2 3e-107 361 269/921 (29%) | Symbols: RPM1, RPS3 | NB-ARC domain-containing disease resistance protein | chr3:2226244-2229024 REVERSE LENGTH=926