MLOC_16535 FPKM values

FPKM by TreatmentFPKM by Replicate





Treatment IDTreatment DescriptionRep 1 FPKMRep 2 FPKMRep 3 FPKMTreatment FPKM
EMB4-day embryos dissected from germinating grains4.8327726.417424.590614.021
LEAShoots from the seedlings (10 cm shoot stage)33.241620.222914.135616.344
INF1Young developing inflorescences (5mm)32.168227.940927.968818.7252
INF2Developing inflorescences (1-1.5 cm)32.070930.671328.404726.7112
ROORoots from the seedlings (10 cm shoot stage)7.7585618.306711.524513.9274
NODDeveloping tillers at six leaf stage, 3rd internode25.358819.62748.4760849.9979
CAR5Developing grain, bracts removed (5 DPA)20.238217.722120.260514.2993
CAR15Developing grain, bracts removed (15 DPA)11.84410.717311.690519.3271



CDS Structure of MLOC_16535






Members of Gene Cluster

This cluster has a confidence assignment of High Confidence.

The gene has a transcript that is part of a cluster represented by MLOC_16535.1
Cluster memberProbe IDFPKM by replicateFPKM by treatmentSource Contig
MLOC_16535.1CUST_9455_PI427708080AvailableAvailablecontig_1573633 (Mapped)




Homology of Longest Transcript to Model Species (BLASTX to E-value < 1e-50)

DatabaseHitFrameE-valueScore% IdentityDescription
Rice PP6 LOC_Os01g56590.1 +2 1e-56 206 111/155 (72%) 13101.m05995 protein guanine nucleotide exchange family protein, putative, expressed
TAIR PP10 AT5G27970.1 +2 2e-110 358 208/312 (67%) ARM repeat superfamily protein | chr5:10004720-10015429 FORWARD LENGTH=1630